FRalanyzer Results of Query EF3048 with Template 1w1a2 (Bioinfo Id 49416)


1w1a2: structure of bacillus subtilis pdaa in complex with nag, a family 4 carbohydrate esterase. 



                                               10        20        30        40        50        60        70        80        90        100       110       120       130         140       150       160       170       180       190       200       210       220       230       240       250       260
Predicted Secondary Structure 
                                       ----EEEEE--------HHHHHHHHHHH---EEEHHH----HHHHHHHHHHHH------EEEEEEEE------------------------ HHHHHH----HHHHHHHHHHHHHHHHH-----------HHHH---H  HHHHHHHHHHHH----EEE--------HHHHHHH------HHH---------HHHHHHHHHHHH------EEEEE------------------HHHHHHH---HHHHHHHHH--------HHH----
Query Sequence of EF3048     
                                       MSNKKLIINADDFGYTPAVTQGIIEAHKRGVVTSTTALPTSPYFLEAMESARISAPTLAIGVHLTLTLNQAKPILPREMVPSLVDEAGYFW HQSIFEEKVNLEEVYNEWDAQIISFMKSGRRPDHIDSHHNVHGKNK  KLLGVALALARKYQLPLRNASRSIETKDYLELYQDVRTPDEMLYQFYDKAISTETILQLLDMVVCSEGEVFEINCHPAFIDTILQNQSGYCMPRIREVEILTSQEVKEAIEERGILLANYESLAMMM
1w1a 2 Sequence from alignment    
VPNEPINWGFKRSVNHQPPDAGKQLNSLIEKYDAFYLGNTKEKTIYLTFDN GYENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNH                            SFHHPDLTTKTADQIQDELDSVNEEVYKI      TGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAF                     VDWKINNQKGKKYAYDHMIKQAHPGAIYLLHTV               SRDNAEAL  DDAITDLKKQGYTFKSIDDL    MFEKEMR
1w1a 2 Sequence from PDB 
VPNEPINWGFKRSVNHQPPDAGKQLNSLIEKYDAFYLGNTKEKTIYLTFDN GYENGYTPKVLDVLKKHRVTGTFFVTGHFVKDQPQLIKRMSDEGHIIGNH                            SFHHPDLTTKTADQIQDELDSVNEEVYKI      TGKQDNLYLRPPRGVFSEYVLKETKRLGYQTVFWSVAF                     VDWKINNQKGKKYAYDHMIKQAHPGAIYLLHTV               SRDNAEAL  DDAITDLKKQGYTFKSIDDL    MFEKEMR
Secondary Structure 
-----EE------tt-------HHHHHHHHH--------t--tEEEEEEEE ------HHHHHHHHHH-----EEEE-HHHHHH-HHHHHHHHH---EEEE-                            -t---tHHH--HHHHHHHHHHHHHHHHHH      H------EE--HHHEE-HHHHHHHHH---EE-------                     tt--HHH---HHHHHHHHHH---t-EEEEE---               -t-HHHHH  HHHHHHHHH---EEE-HHHH    HHHHH--
Active site residues 
                                                 *- *                                                *                               *         -                               --*            -       -                           *                         * *
Template Swissprot ASR 
                                                                                                                                  -
Prosite Pattern(s) 
                                                                                                                                                                                                                                     -------- -
Contacts to Ligand 
                         --          -           *  *                                                *                               *            -         -                 --*** -                 *-                          *                         * *
Contacts to Metal 
                                                  -                                                                                                                                                                                     -   -                                                  -
Template Swissprot Signals 
  ---
H bonds to Ligand 
                          -                      *-                                                  *                               *                                        -  *                                                      -   -                 *                                -


Sequence Identity Match: 27/187=14%,

Secondary Structure Match: 132/187=70%

Information of Template Sequence from PDBSum and SwissProt Databases

PDBSum Info To Bring Local Copy
Residue Conservation (no information)    
Representation of conserved regions from Low to High:   1 2 3 4 5 6 7 8 9
Active Side Residue
Prosite
Contacts to DNA (no information)
Contacts to Ligand(s)  (Ligands: GOL NDG)
Contacts to Metal(s)
Hbonds to ligand(s)
Select All


SwissProt Info
SwissProt Information for Template (local copy available)


Best Hit : PDAA_BACSU Probable polysaccharide deacetylase pdaA precursor (EC 3.-.-.-).
seq. id. 100 %, evalue e-135
See blast file

Template Swissprot Active Side Residue
Template Swissprot Prosite (no information)
Template Swissprot Disulfid (no information)
Template Swissprot DNA (no information)
Template Swissprot Metal (no information)
Template Swissprot Binding (no information)
Template Swissprot Cabind (no information)
Template Swissprot Signal
Template Swissprot Domain (no information)


Information of Query Sequence from SwissProt Database


SwissProt Info
SwissProt Information for Query (local copy available)

Retreive secondary structure and full sequence

Secondary Structure
Sequence from PDB



View 3-D Models

Input Model: In Jmol PDB File


Template Model: In Jmol PDB File


Superimposed Model: In Jmol PDB File


COG search

Run Cognitor for Query Sequence

Domain Prediction

Domain Prediction for Query from Meta-DP available here

GO Prediction

Run GO Prediction for Query at Meta-GO





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