Protein (1cg2 A) structure information

FRalanyzer Results of Query 1ylo with Template 1cg2A

1cg2A: carboxypeptidase g2

	10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340
Query Swissprot Domains	******* ********************
Predicted Secondary Structure
Query Sequence of 1ylo	SNAXDLSLLKALSEADAIAS SEQEVRQILLEEAARLQKEVRFDGL GSVLIRLNESTGPKVXICAHXDEVGFXVRSISREGAIDVLPVGNVRXAARQLQPVRITTREECKIPGLLDGDRQGNDVSAXRVDIGARTYDEVXQAGIRPGDRVTFDTTFQVLPHQRVXGKAF DDRLSCYLLVTLLRELH DAELPAEVWLVASSSEEVGLRGGQTATRAV SPDVAIVLDTACWAKNFDYGAANHRQIGNGPXLVLSDK SLIA PPKLTAWIETVAAEIGVPLQADXFSNGGTDGGAVHLTGTGVPTLVX GPATRHGHCAASIA DCRDILQXEQLLSALIQRLTRETVVQLTDFR
1cg2 A Sequence from alignment	QKRDNVLFQAATDEQPAVIKTLEKLVNIETGTGDAEGIAAAGNFLEAELKNLGFTVTRSKSAGLVVGDNIVGKIKGRGGKNLLLMSHMDTVYL KGILAKAPFRVEGDKAYGPGIADDKGGNAVILHTLKLLKEYGVRDYGTITVLFNTDEEKGSFGSRDLIQEEAKLADYVLSFEPT SAGDEKLSLGTSGIAYVQVNITGKASHAGAAPELGVNALVEASDLVLRTMNIDDKAKNLRFNWTIAKAGNVSNIIPASATLNADVRYARNEDFDAAMKTLEERAQQKKLPEADVKVIVTRGRPAFNAGEGGKKLVDKAVAYYKEAGGTLGVEERTGGGTDAAYAALS GKPVIESLGLPGFGYHSDKAEYVDISAIPRRLYMAARLIMDLGAGK
Secondary Structure	----HHHHHHHHHHHHHHHHHHHHHHt----t-tHHHHHHHHHHHHHHHHH---EEEEEE--t----EEEEEEEE------EEEEEE------ t-HHHH---EEEt-EEE-t-----HHHHHHHHHHHHHHHH----t--EEEEEEEt-HHH--tt-HHHHHHHHHH-tEEEE---E Ett--EEE-EE-EEEEEEEEEE---EEtt--HHH---HHHHHHHHHHHHHHH--tt--EEEEEEEEEE---t-EE--EEEEEEEEEE--HHHHHHHHHHHHHHH-t-t-t--EEEEEEEE----EE-HHHHHHHHHHHHHHHHH-----EEE--------HHHHHHH ---EE-----EEE-t------EEEHHHHHHHHHHHHHHHHHHH--
(PDB numbering for template)	35 45 55 65 75 85 95 105 115 125 135 145 155 165 175 185 195 205 215 225 235 245 255 265 275 285 295 305 315 325 335 345 355 365 375 385 395 405
Residue Conservation	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Active site residues	* * * * *
Template Swissprot ASR	- ----
Prosite Pattern	LLLMSH D V IAD KG A L - ----- - I VLF DEE-G - - -- -- -
[LIV]-[GALMY]-[LIVMF]-{Q}-[GSA]-H-x-D-[TV]-[STAV]
[GSTAI]-[SANQCVIT]-D-x-K-[GSACN]-x(1,2)-[LIVMA]-x(2)-[LIVMFY]-x(12,17)-[LIVM]-x-[LIVMF]-[LIVMSTAGC]-[LIVMFA]-x(2)-[DNGM]-E-E-x(0,1)-[GSTNE]
Contacts to Ligand	-- - - - - -- - --- -- -- - - --- -- - - - - -- - - - -
Contacts to Metal	- - - - -
Template Swissprot Metals	- -- - -- - --* -* - * - -----* - - - - - - -----*
Template Swissprot Signals	------------
H bonds to Ligand	- - -- - -- - --- - - -

Sequence Identity Match: 50/247=20%,

Secondary Structure Match: 0/247=0%

Information of Template Sequence from PDBSum and SwissProt Databases

PDBSum Info To Bring Local Copy

Residue Conservation

Active Side Residue

Prosite

Contacts to DNA (no information)

Contacts to Ligand(s)

Contacts to Metal(s)

Hbonds to ligand(s)

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SwissProt Info
SwissProt Information for Template (local copy available)

Best Hit : CBPG_PSES6 Carboxypeptidase G2 precursor (EC 3.4.17.11) (Folate hydrolase G2) (Pteroylmonoglutamic acid hydrolase G2) (Glutamate carboxypeptidase).
seq. id. 100 %, evalue 0.0
See blast file

Template Swissprot Active Side Residue
Template Swissprot Prosite (no information)
Template Swissprot Disulfid (no information)
Template Swissprot DNA (no information)
Template Swissprot Metal
Template Swissprot Binding (no information)
Template Swissprot Cabind (no information)
Template Swissprot Signal
Template Swissprot Domain (no information)

Information of Query Sequence from SwissProt Database

SwissProt Info
SwissProt Information for Query (local copy available)

Best Hit : YPDE_ECOLI Hypothetical protein ypdE.
seq. id. 95 %, evalue 0.0
See blast file

Query Swissprot Active Side Residue (no information)
Query Swissprot Prosite (no information)
Query Swissprot Disulfid (no information)
Query Swissprot DNA (no information)
Query Swissprot Metal (no information)
Query Swissprot Binding (no information)
Query Swissprot Cabind (no information)
Query Swissprot Signal (no information)
Query Swissprot Domain

Retreive secondary structure and full sequence

Secondary Structure
Sequence from PDB

COG search

Run Cognitor for Query Sequence

Domain Prediction

Run Domain Prediction for Query using Meta-DP

GO Prediction

Run GO Prediction for Query at Meta-GO

Representation of conserved regions from Low to High:	1	2	3	4	5	6	7	8	9

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PDBSum Info	To Bring	Local Copy
Residue Conservation
Active Side Residue
Prosite
Contacts to DNA		(no information)
Contacts to Ligand(s)
Contacts to Metal(s)
Hbonds to ligand(s)
	Select All

Template Swissprot Active Side Residue
Template Swissprot Prosite	(no information)
Template Swissprot Disulfid	(no information)
Template Swissprot DNA	(no information)
Template Swissprot Metal
Template Swissprot Binding	(no information)
Template Swissprot Cabind	(no information)
Template Swissprot Signal
Template Swissprot Domain	(no information)

Query Swissprot Active Side Residue	(no information)
Query Swissprot Prosite	(no information)
Query Swissprot Disulfid	(no information)
Query Swissprot DNA	(no information)
Query Swissprot Metal	(no information)
Query Swissprot Binding	(no information)
Query Swissprot Cabind	(no information)
Query Swissprot Signal	(no information)
Query Swissprot Domain